Ribonucleotide Reductase Protein R1, domain 1

-
mainly α class example

Basic info about members of the topology level:

Structure
Resolution (Å)
Length (aa)
SSE content (%)
1rlr
2.5
85
51.1
1yfm
2.6
52
63.1
1fur
1.95
51
64.7
1auw
2.5
71
66.4
1jsw
2.8
49
59
1hy1
2.3
71
64.7
1i0a
2.5
71
64


Number in parentheses in column” Another true positives” means number of retrieved true positives.
First columns of the tables contain PDB ID of structures.


CE
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
Yes
No
2
172
1yfm
Yes
Yes (2)
3
127
1fur
Yes
Yes (3)
4
30
1auw
Yes
Yes (1)
3
454
1jsw
Yes
Yes (3)
5
7
1hy1
No
Yes (3)
5
422
1i0a
Yes
Yes (3)
5
108

Dali
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
Yes
No
2
73
1yfm
No
Yes (3)
2
22
1fur
Yes
Yes (2)
2
20
1auw
Yes
Yes (2)
4
43
1jsw
Yes
Yes (1)
2
30
1hy1
Yes
Yes (1)
2
2
1i0a
No
Yes (2)
3
52

Dejavu
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
Yes
No
2
14
1yfm
Yes
Yes (2)
4
213
1fur
Yes
Yes (2)
4
38
1auw
Yes
Yes (1)
3
41
1jsw
Yes
Yes (2)
4
ND
1hy1
Yes
Yes (2)
4
ND
1i0a
Yes
Yes (2)
4
ND
ND – not defined due to problems with the server

Lock
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
No
No
1
13
1yfm
No
No
1
2
1fur
No
No
1
5
1auw
No
No
1
5
1jsw
No
No
1
5
1hy1
No
No
1
6
1i0a
No
No
1
7

Matras
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
Yes
No
2
13
1yfm
No
Yes (1)
2
6
1fur
Yes
No
2
7
1auw
Yes
No
2
7
1jsw
Yes
No
2
6
1hy1
Yes
No
2
7
1i0a
Yes
No
2
6yes

Pride
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
Yes
No
2
Sec
1yfm
No
Yes (2)
2
Sec
1fur
Yes
Yes (1)
2
Sec
1auw
Yes
No
2
Sec
1jsw
Yes
Yes (1)
2
Sec
1hy1
Yes
Yes (1)
3
Sec
1i0a
No
Yes (2)
3
Sec

SSM
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
No
No
1
Sec
1yfm
No
No
1
Sec
1fur
No
No
1
Sec
1auw
No hits

Sec
1jsw
No
No
1
Sec
1hy1
No hits

Sec
1i0a
No hits

Sec

Top
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
Yes
No
2
ND
1yfm
Yes
Yes (2)
4
ND
1fur
Yes
Yes (2)
4
ND
1auw
Yes
Yes (2)
2
ND
1jsw
Yes
Yes (2)
4
ND
1hy1
No
Yes (3)
2
ND
1i0a
No
Yes (4)
2
ND
ND – not determined

Tops
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
No hits


1yfm
No hits


1fur
No hits



1auw
No hits


1jsw
No hits


1hy1
No hits


1i0a
No hits




Topscan
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
Yes
No
2
Sec
1yfm
Yes
Yes (1)
2
Sec
1fur
Yes
No
2
Sec
1auw
Yes
Yes (2)
2
Sec
1jsw
Yes
Yes (2)
2
Sec
1hy1
Yes
Yes (2)
3
Sec
1i0a
No
Yes (3)
3
Sec


Vast
Found itself on first position
Another true positive
First false positive
Time (min)
1rlr
Yes
No
2
17
1yfm
No
Yes (1)
2
7
1fur
Yes
No
2
15
1auw
No
No
1
15
1jsw
Yes
No
2
15
1hy1
No
No
1
15
1i0a
No
Yes (1)
2
15


Server
Trivial solution found (itself)
Non-trivial solutions found
Rank of first false positive
Time (minutes)
CE
6
6
2-5
5 – 450
DALI
5
6
2-4
5 - 75
DEJAVU
7
6
2-4
5 - 215
LOCK
0
0
1
5-13
MATRAS
6
1
2
5-15
PRIDE
5
5
2-3
Sec
SSM
0
0
1
Sec
TOP
5
6
2-4
ND
TOPS
0
0
-
2
TOPSCAN
6
5
2-3
Sec
VAST
3
2
1-2
5-15