L-2-haloacid Dehalogenase, domain 2
-
mainly α class example

Basic info about members of the topology level:

Structure
Resolution (Å)
Length (aa)
SSE content (%)
1aq6
1.95
75
58.3
1c3u
2.3
80
37.4
1fez
3.0
77
55.1
1jud
2.5
74
60.9
1zrn
1.83
74
60.4

Number in parentheses in column” Another true positives” means number of retrieved true positives.
First columns of the tables contain PDB ID of structures.


CE
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
Yes
Yes (2)
4
291
1c3u
Yes
No
2
22
1fez
Yes
Yes (3)
5
12
1jud
Yes
Yes (3)
5
12
1zrn
No
Yes (3)
5
14

Dali
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
Yes
No
2
3
1c3u
Yes
No
2
61
1fez
Yes
No
2
4
1jud
Yes
No*
2
46
1zrn
No
Yes (1)
2
4
* - hit found as the 150th in the list (too far away to be considered as success)

Dejavu
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
No
No
1
25
1c3u
Yes
No
2
37
1fez
Yes
No
2
22
1jud
No
No
1
46
1zrn
Yes
Yes (2)
4
10

Lock
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
No
No
1
6
1c3u
No
No
1
4
1fez
No
No
1
6
1jud
No
No
1
7
1zrn
No
No
1
7

Matras
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
Yes
Yes (1)
3
8
1c3u
Yes
No*
2
7
1fez
Yes
No**
2
6
1jud
Yes
Yes (1)
3
8
1zrn
Yes
Yes (2)
4
11
* - two true positives with rank 42. and 48. (far away)
** - one true positive with rank 20.

Pride
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
Yes
Yes (1)
3
Sec
1c3u
Yes
No
2
Sec
1fez
No
No
1
Sec
1jud
Yes
Yes (1)
3
Sec
1zrn
No
Yes (2)
3
Sec

SSM
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
No
No
1
Sec
1c3u
No hits

Sec
1fez
No
No
1
Sec
1jud
No
No
1
Sec
1zrn
No
No
1
Sec

Top
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
Yes
Yes (1)
3
ND
1c3u
Yes
No
2
ND
1fez
No
Yes (1)
1
ND
1jud
No
Yes (2)
3
ND
1zrn
Yes
Yes (1)
3
ND
ND – not determined
Tops
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
No hits

2
1c3u
No hits

2
1fez
No hits

2
1jud
No hits

2
1zrn
no
No
1
2

Topscan
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
Yes
Yes
2
Sec
1c3u
No
No*
1
Sec
1fez
No
No*
1
Sec
1jud
Yes
Yes (1)
3
Sec
1zrn
No
Yes (2)
3
Sec
* - in both cases one true positive only after rank 50.

Vast
Found itself on first position
Another true positive
First false positive
Time (min)
1aq6
Yes
No
2
15
1c3u
Yes
No
2
15
1fez
Yes
Yes (2)
2
15
1jud
No
Yes (3)
3
15
1zrn
No
Yes (2)
3
27


Summary
Server
Trivial solution found (itself)
Non-trivial solutions found
Rank of first false positive
Time (minutes)
CE
3
4
2-5
10-25
DALI
4
1
2
5-60
DEJAVU
3
1
1 - 4
5 - 25
LOCK
0
0
1
5-10
MATRAS
5
3
2-4
5-10
PRIDE
3
3
1-3
Sec
SSM
0
0
1
Sec
TOP
3
4
1-3
ND
TOPS
0
0
1
2
TOPSCAN
2
3
1-3
Sec
VAST
2
3
2-3
15-25