Restriction
endonuclease, domain 2
Alpha-Beta
proteinsÕ example
Basic info about members of the topology level:
|
|
Resolution () |
length |
SSE content (%) |
|
1fok |
2,8 |
178 |
53 |
|
1d2iA |
1,7 |
223 |
58 |
|
1cfr |
2,15 |
283 |
61 |
|
1bhmA |
2,2 |
198 |
59 |
ServersÕ results:
Numbers in parentheses in columnÓ Another true positivesÓ means number of
retrieved true positives and their rankg in the list of hits.
First columns of the tables contain PDB ID of structures.
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
yes |
Yes (3-4,15,16) |
2 |
8 min |
|
1d2iA |
yes |
Yes (3-2,5,7) |
3 |
9 min |
|
1cfr |
yes |
Yes (3-6,23,26) |
2 |
11 min |
|
1bhmA |
yes |
Yes(3-2,4,5) |
3 |
8 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
yes |
no |
2 |
13 min |
|
1d2iA |
Yes |
Yes(1) |
3 |
20 min |
|
1cfr |
yes |
Yes(2-21,51) |
2 |
15 min |
|
1bhmA |
yes |
Yes(1) |
3 |
11 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
yes |
Yes(3) |
5 |
13 hours |
|
1d2iA |
yes |
Yes(2-2,5) |
3 |
|
|
1cfr |
yes |
no |
2 |
|
|
1bhmA |
yes |
Yes(2-2,8) |
3 |
|
CE processing times are unknown for the
most of the structures, because we used pre-computed results.
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
yes |
Yes(1-3) |
2 |
9 min |
|
1d2iA |
yes |
Yes(1) |
3 |
12 min |
|
1cfr |
yes |
no |
no |
6 min |
|
1bhmA |
yes |
Yes(1) |
no |
4 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
yes |
Yes(1) |
3 |
2 min |
|
1d2iA |
no |
Yes(1) |
2 |
4 min |
|
1cfr |
yes |
Yes(2>10) |
4 |
2 min |
|
1bhmA |
yes |
Yes(2>10) |
4 |
3min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
yes |
Yes (1-500pos) |
2 |
seconds |
|
1d2iA |
no |
Yes(1-103) |
1 |
seconds |
|
1cfr |
yes |
no |
2 |
seconds |
|
1bhmA |
yes |
no |
2 |
seconds |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
no |
Yes(1-14) |
1 |
34 min |
|
1d2iA |
no |
yes |
2 |
10 min |
|
1cfr |
no |
Yes(1-5) |
1 |
12 min |
|
1bhmA |
yes |
no |
2 |
8 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
yes |
Yes(3-2,13,14) |
3 |
31 min |
|
1d2iA |
yes |
Yes(3-2,7,13) |
3 |
30 min |
|
1cfr |
yes |
Yes (2-6,21) |
2 |
19 min |
|
1bhmA |
yes |
Yes(2-2,15) |
3 |
15 min |
SSM
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
Yes |
No |
No |
2 min |
|
1d2iA |
Yes |
No |
No |
3 min |
|
1cfr |
Yes |
No |
no |
3 min |
|
1bhmA |
No |
no |
no |
1 min |
Dejavu
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
no |
no |
No |
3 |
|
1d2iA |
no |
no |
No |
4 |
|
1cfr |
no |
no |
No |
1 |
|
1bhmA |
yes |
no |
2 |
5 |
Pride
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1fok |
Yes |
No |
2 |
Secx |
|
1d2iA |
Yes |
No |
2 |
Sec |
|
1cfr |
No |
No |
1 |
Sec |
|
1bhmA |
yes |
no |
2 |
sec |
Summary
Server
|
Trivial solution found (itself)
|
Non-trivial solutions
found
|
Rank of first false positive 2 |
Time |
|
CE 1 |
4 |
3 |
2-5 |
|
|
Dali |
4 |
4 |
2-3 |
5-10 |
|
Dejavu |
1 |
0 |
0 or 2 |
1-5 |
|
Lock |
1 |
3 |
1-2 |
10-35 |
|
Matras |
4 |
4 |
2-3 |
15-30 |
|
Pride |
3 |
0 |
1-2 |
<1 |
|
SSM |
3 |
0 |
0 |
1-3 |
|
Top |
4 |
3 |
2-3 |
5-10 |
|
Tops |
4 |
4 |
2-4 |
<5 |
|
Topscan |
3 |
0 |
1-2 |
<1 |
|
Vast |
4 |
4 |
2-3 |
10-20 |