Cyclophilin
Maily β example
Basic info about members of the topology level:
|
|
Resolution () |
length |
SSE content (%) |
|
1awg |
1,58 |
164 |
43 |
|
1a33 |
2,15 |
174 |
44 |
|
1cyn |
1,85 |
178 |
48 |
|
1qoi |
2,0 |
173 |
45 |
|
1lop |
1,8 |
164 |
48 |
|
1qng |
2,1 |
170 |
45 |
|
2rmc A |
1,64 |
182 |
47 |
|
1dyw |
1,8 |
172 |
43 |
|
1ihg |
1,8 |
364 |
56 |
Serverss results:
Number in
parentheses in column Another true positives means number of retrieved true
positives
First columns of the tables contain PDB ID of structures.
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
yes |
yes |
3. |
4 min |
|
1a33 |
yes |
yes |
3. |
3 min |
|
1cyn |
yes |
yes |
3. |
5 min |
|
1qoi |
yes |
yes |
3. |
5 min |
|
1lop |
yes |
yes |
no |
4 min |
|
1qng |
yes |
yes |
3. |
4 min |
|
2rmc |
yes |
yes |
no |
9 min |
|
1dyw |
yes |
yes |
3. |
4 mim |
|
1ihg |
yes |
yes |
3. |
4 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
yes |
Yes(1) |
no |
12 min |
|
1a33 |
No |
Yes(2) |
no |
10 min |
|
1cyn |
No |
Yes(2) |
no |
8 min |
|
1qoi |
No |
Yes(2) |
no |
8 min |
|
1lop |
yes |
Yes(1) |
no |
10 min |
|
1qng |
No |
Yes(2) |
no |
10 ,in |
|
2rmc |
No |
Yes(2) |
no |
5 min |
|
1dyw |
No |
Yes (2) |
no |
10 min |
|
1ihg |
no |
Yes(2) |
3. |
25 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
Yes |
Yes (6) |
8 |
9 min |
|
1a33 |
Yes |
Yes (6) |
8 |
9 min |
|
1cyn |
Yes |
Yes (6) |
no |
9 min |
|
1qoi |
Yes |
Yes (6) |
8 |
7 min |
|
1lop |
yes |
Yes(1) |
no |
10 min |
|
1qng |
no |
Yes(5) |
6. |
8 min |
|
2rmc |
Yes |
Yes (6) |
8 |
9 min |
|
1dyw |
yes |
Yes (6) |
8 |
9 min |
|
1ihg |
no |
Yes(3) |
no |
8 min |
Tops
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
yes |
Yes(4) |
6 |
2 min |
|
1a33 |
yes |
Yes(4) |
6 |
2 min |
|
1cyn |
yes |
Yes(4) |
6 |
4 min |
|
1qoi |
no |
Yes(5, 1>10) |
6 |
2 min |
|
1lop |
yes |
Yes(5>10score) |
5 |
5 min |
|
1qng |
no |
Yes(5) |
6 |
3 min |
|
2rmc |
Yes |
Yes(3) |
5 |
3 min |
|
1dyw |
No |
Yes(5) |
6 |
3 min |
|
1ihg |
No |
Yes(1>10) |
2 |
4 min |
Topscan
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
yes |
Yes(4) |
6 |
Seconds |
|
1a33 |
yes |
Yes(4) |
6 |
Seconds |
|
1cyn |
yes |
Yes(4) |
6 |
seconds |
|
1qoi |
no |
Yes(5) |
6 |
Seconds |
|
1lop |
yes |
Yes(4) |
4 |
Seconds |
|
1qng |
no |
Yes(5) |
6 |
Seconds |
|
2rmc |
yes |
Yes(4) |
6 |
seconds |
|
1dyw |
no |
Yes(5) |
6 |
Seconds |
|
1ihg |
no |
Yes(4) |
5 |
1 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
no |
Yes (1) |
2 |
8 min |
|
1a33 |
no |
Yes (1) |
2 |
9 min |
|
1cyn |
no |
Yes (1) |
2 |
10 min |
|
1qoi |
no |
Yes (1) |
2 |
9 min |
|
1lop |
no |
Yes (1) |
2 |
9 min |
|
1qng |
no |
Yes (1) |
2 |
8 min |
|
2rmc |
yes |
no |
2 |
8 min |
|
1dyw |
no |
Yes (1) |
2 |
8 min |
|
1ihg |
no |
Yes (1) |
2 |
15 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
yes |
Yes(2) |
4(only one) |
|
|
1a33 |
yes |
Yes(2) |
4(only one) |
|
|
1cyn |
yes |
Yes(2) |
4(only one) |
|
|
1qoi |
yes |
Yes(2) |
4(only one) |
|
|
1lop |
yes |
Yes(2) |
no |
|
|
1qng |
yes |
Yes(2) |
4(only one) |
|
|
2rmc |
yes |
Yes(2) |
4(only one) |
|
|
1dyw |
yes |
Yes(2) |
4(only one) |
|
|
1ihg |
yes |
Yes (many) |
After all true hits |
20 hours |
CE processing times are unknown for most
of the structures, because we used pre-computed results (see paper).
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
yes |
Yes (2) |
4 |
11 min |
|
1a33 |
no |
Yes(3) |
4 |
11 min |
|
1cyn |
no |
Yes(3) |
4 |
20 min |
|
1qoi |
no |
Yes(3) |
4 |
45 min |
|
1lop |
yes |
Yes(2) |
4 |
11 min |
|
1qng |
no |
Yes(3) |
4 |
37 min |
|
2rmc |
no |
Yes(3) |
4 |
48 min |
|
1dyw |
no |
Yes(3) |
4 |
19 min |
|
1ihg |
yes |
Yes (2) |
4 |
41 min |
Times are probably biased with uploading
all structures together.
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
yes |
Yes(13) |
15 |
54 min |
|
1a33 |
yes |
Yes(13) |
15 |
12 min |
|
1cyn |
yes |
Yes(13) |
15 |
15 min |
|
1qoi |
yes |
Yes(13) |
no |
5 min |
|
1lop |
yes |
Yes(13) |
15 |
20 min |
|
1qng |
yes |
Yes(13) |
no |
16 min |
|
2rmc |
yes |
Yes(13) |
15 |
5 min |
|
1dyw |
yes |
Yes(13) |
15 |
21 min |
|
1ihg |
yes |
Yes(11) |
no |
22 min |
Number of true positives doesnt mean in this particular case the number of
matched structures,
but the number of matched chains.
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
Yes |
Yes (94) |
no |
2 |
|
1a33 |
yes |
Yes (94) |
no |
2 |
|
1cyn |
No |
Yes(90) |
no |
2 |
|
1qoi |
No |
Yes (93) |
no |
2 |
|
1lop |
Yes |
No |
no |
3 |
|
1qng |
Yes |
Yes(88) |
no |
2 |
|
2rmc |
No |
Yes (94) |
no |
2 |
|
1dyw |
Yes |
Yes(93) |
no |
2 |
|
1ihg |
Yes |
Yes (93) |
no |
2 |
Number of true positives doesnt mean in this particular case the number of
matched structures,
but the number of matched chains.
Pride
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
1awg |
Yes |
Yes(5) |
7 |
Sec |
|
1a33 |
No |
Yes(7) |
8 |
Sec |
|
1cyn |
Yes |
Yes(5) |
7 |
Sec |
|
1qoi |
Yes |
Yes(7) |
9 |
Sec |
|
1lop |
Yes |
Yes(6) |
5 |
Sec |
|
1qng |
Yes |
Yes(6) |
6 |
Sec |
|
2rmc |
No |
Yes(8) |
9 |
Sec |
|
1dyw |
Yes |
Yes(6) |
8 |
Sec |
|
1ihg |
No |
No |
1 |
Sec |
Summary
|
Server |
Trivial
solution found (itself) |
Non-trivial
solutions found |
Rank of
first false positive |
Time |
|
CE |
9 |
9 |
0 or 4 |
|
|
Dali |
9 |
9 |
0 or 3 |
5-10 |
|
Dejavu |
9 |
9 |
No or 15 |
5-55 |
|
Lock |
1 |
8 |
2 |
5-15 |
|
Matras |
9 |
9 |
3 |
10-45 |
|
Pride |
6 |
8 |
1-9 |
<1 |
|
SSM |
6 |
8 |
0 |
2-3 |
|
Top |
7 |
9 |
6-8 |
5-10 |
|
Tops |
5 |
9 |
2-6 |
<5 |
|
Topscan |
5 |
9 |
4-6 |
<1 |
|
Vast |
2 |
9 |
0 or 3 |
5-25 |