Vitelline Membrane Outer Layer Protein I, subunit A
-

Mainly β class example




Basic info about members of the topology level:

Structure
Resolution (Å)
Length (aa)
SSE content (%)
1c3k
2.0
143
63.6
1ciy
2.25
144
59.4
1jac
2.43
133
63.9
1jot
2.2
133
63.9
1dlc
2.5
197
60.1
1vmo
2.2
163
39.3


Number in parentheses in column” Another true positives” means number of retrieved true positives.
First columns of the tables contain PDB ID of structures.


CE
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
yes
Yes (5)
-
14
1ciy
yes
Yes (5)
7
7
1jac
yes
Yes (3)
-
8
1jot
yes
Yes (3)
-
6
1dlc
yes
Yes (4)
6
591
1vmo
yes
Yes (5)
-
20

Dali
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
yes
Yes (2)
-
4
1ciy
yes
Yes (2)
-
3
1jac
yes
Yes (4)
-
3
1jot
yes
Yes (4)
-
3
1dlc
yes
Yes (3)
-
4
1vmo
yes
Yes (2)
-
3

Dejavu
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
yes
Yes (2)
4
1ciy
yes
Yes (1)
-
1jac
yes
Yes (5)
7
1jot
yes
Yes (2)
-
1dlc
yes
Yes (1)
-
1vmo
yes
Yes (3)
5
Times are unknown due to temporal problems on the server
Lock
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
No
Yes (2)
3
10
1ciy
No
Yes (2)
3
6
1jac
No
Yes (2)
3
10
1jot
No
Yes (2)
3
4
1dlc
Yes
Yes (1)
3
9
1vmo
Yes
Yes (1)
3
10




Matras
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
yes
Yes (2)
4
13
1ciy
yes
Yes (2)
-
17
1jac
yes
Yes (3)
5
9
1jot
yes
Yes (3)
5
10
1dlc
yes
Yes (3)
5
13
1vmo
Yes
Yes (2)
4
15

Pride
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
Yes
Yes (2)
4
Sec
1ciy
No
No
1
Sec
1jac
Yes
Yes (2)
4
Sec
1jot
No
Yes (2)
4
Sec
1dlc
No
No
1
Sec
1vmo
Yes
No
2
Sec

SSM
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
Yes
Yes (2)
-
Sec
1ciy
No hits

Sec
1jac
Yes
Yes (1)
-
Sec
1jot
Yes
Yes (2)
-
Sec
1dlc
No hits

Sec
1vmo
Yes
No
-
Sec

Top
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
Yes
Yes (5)
7
ND
1ciy
Yes
Yes (5)
-
ND
1jac
Yes
Yes (5)
7
ND
1jot
Yes
Yes (5)
7
ND
1dlc
Yes
Yes (5)
-
ND
1vmo
Yes
Yes (4)
6
ND

ND – not determined

Tops
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
No
Yes (3)
3
2
1ciy
Yes
Yes (1)
3
2
1jac
No
Yes (3)
3
2
1jot
No
Yes (2)*
3
2
1dlc
Yes
Yes (2)
3
2
1vmo
Yes
Yes (2)
4
2

Topscan
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
No
Yes (2)
1
Sec
1ciy
Yes
No
2
Sec
1jac
Yes
Yes (2)
2
Sec
1jot
Yes
Yes (1)
3
Sec
1dlc
Yes
No
2
Sec
1vmo
Yes
No
2
Sec

Vast
Found itself on first position
Another true positive
First false positive
Time
(min)
1c3k
Yes
Yes (1)
-
15
1ciy
No
Yes (3)
-
15
1jac
No
Yes (3)
-
12
1jot
Yes
Yes (2)
-
11
1dlc
Yes
Yes (1)
-
20
1vmo
Yes
Yes (1)
-
20

Server
Trivial solution found (itself)
Non-trivial solutions found
Rank of first false positive
Time (minutes)
CE
6
6
None – 7
5-590
DALI
6
6
None
3-5
DEJAVU
6
6
None
ND
LOCK
2
6
3
5 - 10
MATRAS
6
6
None - 5
10-15
PRIDE
3
3
1 - 4
Sec
SSM
3
3
None
Sec
TOP
6
6
0-7
ND
TOPS
3
6
3-4
2
TOPSCAN
1
3
1-3
Sec
VAST
4
6
None
15-20