Pnp Oxidase; Chain: A
-

Mainly β class example




Basic info about members of the topology level:

none of these structures in Lock database

Structure
Resolution (Å)
Length (aa)
SSE content (%)
1ci0
2.7
205
61.4
1dnl
1.8
199
58.8
1eje
2.2
192
54.1
1i0r
1.5
161
58.4

Number in parentheses in column” Another true positives” means number of retrieved true positives.
First columns of the tables contain PDB ID of structures.


CE
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
Yes
Yes (1)
3
10
1dnl
Yes
Yes (2)
3
10
1eje
Yes
Yes (1)
3
7
1i0r
Yes
Yes (2)
4
15

Dali
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
Yes
Yes (3)
3
10
1dnl
Yes
Yes (3)
3
9
1eje
Yes
Yes (2)
3
9
1i0r
Yes
Yes (2)
3
9

Dejavu
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
Yes
Yes (1)
-
2
1dnl
Yes
Yes (1)
-
1
1eje
No hits

1
1i0r
Yes
Yes (1)
-
1

Lock
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
No
No
1
9
1dnl
No
No
1
8
1eje
No
No
1
9
1i0r
No
No
1
8

Matras
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
No
Yes (3)
2
19
1dnl
Yes
Yes (2)
2
16
1eje
Yes
Yes (2)
4
13
1i0r
Yes
Yes (2)
4
12




Pride
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
Yes
Yes (1)
3
Sec
1dnl
Yes
No
2
Sec
1eje
Yes
Yes (1)
3
Sec
1i0r
Yes
Yes (1)
2
Sec

SSM
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
Yes
Yes (1)
3
Sec
1dnl
Yes
Yes (1)
3
Sec
1eje
Yes
No
-
Sec
1i0r
Yes
No
-
Sec

Top
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
Yes
Yes (1)
3
ND
1dnl
Yes
Yes (1)
3
ND
1eje
No
No
-
ND
1i0r
No
Yes (1)
2
ND
ND – not determined
Tops
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
No
No
1
2
1dnl
No
No
1
2
1eje
No
No
1
2
1i0r
No
No
1
2

Topscan
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
No
No
1
Sec
1dnl
No
No
1
Sec
1eje
No
No
1
Sec
1i0r
No
No
1
Sec


Vast
Found itself on first position
Another true positive
First false positive
Time (min)
1ci0
Yes
Yes (3)
3
20
1dnl
Yes
Yes (1)
3
20
1eje
Yes
Yes (3)
5
20
1i0r
Yes
Yes (3)
5
20



Server
Trivial solution found (itself)
Non-trivial solutions found
Rank of first false positive
Time (minutes)
CE
4
4
3-4
5-15
DALI
4
4
3
5-10
DEJAVU
3
3
-
< 2
LOCK
0
0
1
5-10
MATRAS
3
4
2-4
10-20
PRIDE
4
3
2-3
Sec
SSM
4
2
0-3
Sec
TOP
2
3
0-3
ND
TOPS
0
0
1
2
TOPSCAN
0
0
1
Sec
VAST
4
4
3-5
20