Grea Transcript Cleavage Factor, domain 2
-
α-β class example

Basic info about members of the topology level:

Structure
Resolution (Å)
Length (aa)
SSE content (%)
1bkf
1.6
107
44.8
1grj
2.2
151
62.9
1pbk
2.5
116
41.3
1rot
1 model
118
46.6
1yat
2.5
113
42.5


Number in parentheses in column” Another true positives” means number of retrieved true positives.
First columns of the tables contain PDB ID of structures.



CE
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
Yes (3)
-
14
1grj
Yes
No
-
6
1pbk
Yes
Yes (3)
-
857
1rot
Yes
Yes (3)
-
785
1yat
Yes
Yes (3)
-
1647

Dali
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
Yes (4)
5
6
1grj
Yes
No*
2
7
1pbk
Yes
Yes (3)
5
6
1rot
Yes
Yes (4)
6
9
1yat
Yes
Yes (1)
3
7

Dejavu
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
Yes (1)
3
23
1grj
No hits

2
1pbk
No
Yes (1)
2
6
1rot
No hits

15
1yat
No
Yes (3)
4
16

Lock
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
No
2
7
1grj
Yes
No*
2
9
1pbk
No
Yes (2)
3
8
1rot
No
Yes (2)
3
7
1yat
No
Yes (2)
3
6
* one true positive with the rank 24

Matras
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
Yes (1)
3
7
1grj
Yes
No
2
10
1pbk
No
Yes (1)
2
9
1rot
No
Yes (1)
2
9
1yat
No
Yes (1)
2
8

Pride
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
No
2
Sec
1grj
No
No
1
Sec
1pbk
No
Yes (1)
2
Sec
1rot
No
Yes (1)
2
Sec
1yat
No
Yes (1)
2
Sec

SSM
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
Yes (3)
-
Sec
1grj
Yes
No
-
Sec
1pbk
Yes
Yes (2)
-
Sec
1rot
Yes
Yes (3)
-
Sec
1yat
Yes
Yes (3)
-
Sec

Top
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
Yes (3)
5
ND
1grj
Yes
No
2
ND
1pbk
Yes
Yes (3)
5
ND
1rot
Yes
Yes (4)
6
ND
1yat
Yes
Yes (4)
6
ND
ND – not determined
Tops
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
Yes (3)
5
2
1grj
No
Yes (1)*
1
2
1pbk
Yes
Yes (3)
5
2
1rot
No
Yes (3)
4
2
1yat
Yes
Yes (3)
4
2
* hit with unsignificant score
Topscan
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
Yes (2)
4
Sec
1grj
No
No*
1
Sec
1pbk
Yes
Yes (2)
4
Sec
1rot
No
No*
1
Sec
1yat
Yes
Yes (2)
4
Sec

Vast
Found itself on first position
Another true positive
First false positive
Time (min)
1bkf
Yes
Yes (2)
4
6
1grj
Yes
No
-
15
1pbk
Yes
Yes (3)
-
12
1rot
Yes
Yes (2)
-
9
1yat
No
Yes (3)
-
9


Server
Trivial solution found (itself)
Non-trivial solutions found
Rank of first false positive
Time (minutes)
CE
5
4
-
5-1650
DALI
5
4
2-6
5-10
DEJAVU
1
3
2-4
5 - 25
LOCK
2
3
2-3
5-10
MATRAS
3
4
2-3
5-10
PRIDE
1
3
1-2
Sec
SSM
5
4
-
Sec
TOP
5
4
2-6
ND
TOPS
3
5
1-5
2
TOPSCAN
3
3
1-4
Sec
VAST
4
4
4
5-15