Dejavu

You can find the server here

1.1. User interface, on-line help, choice of parameters and databases
On the main page there is a link to help page and reference page, a few options (database choice and choice of parameters (default or user choice) and choice of input file (PDB or SSE)
1.2.Interactive versus E-mail results or notification
upload and also results interactive (without email warning)
1.3. Documentation, access to literature references
Page with references
1.4. Confidentality
The results are treated confidentially.
1.5. Elapsed time between submission and results
Depending on the servers load can take up to 3 hours.
1.6. How long are the results kept on the server ?
10 days

2.1. What information is reported for the hits?
contains PDB ID of matched structure (with hyperlink to PDB), number of matched residues, RMSD, interface with Rasmol showing the structure, structural alignment in text format and account of matched SSE. It contains also LSQman and O output files.
2.2. Measure(s) for goodness-of-fit and statistical significance?
number of matched residues, RMSD, P-score and Z-score.
2.3. Structure-based sequence alignment?
yes, in text format. A possibility to visualize superimposed structures
2.4. PDB files with superimposed structures?
yes, without limitation for a number of superimposed structures.
2.5. Interface with visualization software?
yes - Rasmol, Chime, PDBsum, CATH, SCOP, FFSP, EDS and WhatCheck.
2.6. Hyperlinks to the other web-based resources (e.g., PDB)
PDB, Rasmol, Chime

3.1. Are there parameters the user can set to optimise the results?
minimum number of matched SSE ,minimum number of matched residues, switch on/off directionality and conserve neighboring SSE. You can also choose maximum number shown results
3.2. Is there a choice of database? How much of the structural universe do they cover?
three subsets of PDB (1000%, 95% and 25% identity)
3.3. How often are the databases updated?
twice a year