Mainly α class representative
Basic info about members of the topology level:
|
|
Resolution () |
length |
SSE content (%) |
|
2bct |
2,9 |
502 |
75 |
|
1bk6A |
2,8 |
442 |
73 |
|
1ial |
2,5 |
438 |
71 |
|
1ibrB |
2,3 |
458 |
70 |
|
1gcjA |
2,6 |
460 |
73 |
|
1qbk |
3,0 |
880 |
56 |
|
1b3uA |
2,3 |
588 |
76 |
Serversresults:
Number
in parentheses in column Another true positives means number of retrieved
true positives,
First
columns of the tables contain PDB ID of structures.
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
yes |
Yes(5) |
7 |
10 min |
|
1bk6 |
yes |
Yes(5) |
7 |
10 min |
|
1ial |
yes |
Yes(5) |
7 |
8 min |
|
1ibr |
yes |
Yes(5) |
7 |
7 min |
|
1gcj |
yes |
Yes(5) |
7 |
8 min |
|
1qbk |
yes |
Yes(5) |
7 |
7 min |
|
1b3u |
yes |
Yes(5) |
7 |
19 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
No(3) |
Yes(3) |
no |
31 min |
|
1bk6 |
yes |
Yes(5) |
no |
40 min |
|
1ial |
no |
Yes(6) |
no |
28 min |
|
1ibr |
no |
Yes(3) |
4 |
32 min |
|
1gcj |
no |
Yes(3) |
no |
30 min |
|
1qbk |
yes |
Yes(1) |
no |
47 min |
|
1b3u |
yes |
Yes(3) |
no |
40 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
yes |
Yes(2) |
no |
10 min |
|
1bk6 |
yes |
Yes(3) |
no |
10 min |
|
1ial |
yes |
Yes(3) |
no |
13 min |
|
1ibr |
yes |
no |
no |
7 min |
|
1gcj |
no |
Yes(2) |
no |
16 min |
|
1qbk |
yes |
no |
no |
202 min |
|
1b3u |
yes |
no |
no |
10 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
no |
no |
1. |
2 min |
|
1bk6 |
no |
Yes (1) |
2 |
3 min |
|
1ial |
no |
Yes (1) |
2 |
2 min |
|
1ibr |
no |
Yes (1>10) |
2 |
2 min |
|
1gcj |
no |
no |
no |
1 min |
|
1qbk |
no |
Yes (1>10) |
2 |
3 min |
|
1b3u |
no |
Yes (1>10) |
2 |
2 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
no |
no |
1 |
19 min |
|
1bk6 |
no |
no |
1 |
16 min |
|
1ial |
no |
no |
1 |
20 min |
|
1ibr |
no |
no |
1 |
22 min |
|
1gcj |
no |
no |
1 |
19 min |
|
1qbk |
no |
no |
1 |
47 min |
|
1b3u |
no |
no |
1 |
30 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
Yes |
Yes(1) |
3 |
1 min |
|
1bk6 |
Yes |
Yes(1) |
3 |
1 min |
|
1ial |
no |
Yes(2) |
3 |
1 min |
|
1ibr |
no |
Yes(2) |
3 |
Sec |
|
1gcj |
no |
Yes(2) |
3 |
sec |
|
1qbk |
no |
Yes(2) |
3 |
1 min |
|
1b3u |
no |
Yes(2) |
3 |
1 min |
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
yes |
Yes(7) |
9 |
|
|
1bk6 |
yes |
Yes(8) |
8 |
|
|
1ial |
yes |
Yes(8) |
8 |
|
|
1ibr |
yes |
Yes(8) |
7 |
|
|
1gcj |
yes |
Yes(11) |
12 |
|
|
1qbk |
yes |
Yes(9) |
11 |
|
|
1b3u |
yes |
Yes(6) |
8 |
|
CE processing times are unknown because,
because we used pre-computed results.
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
yes |
Yes(5) |
7 |
132 min |
|
1bk6 |
Yes(4.) |
Yes(5) |
7 |
43 min |
|
1ial |
no |
Yes(6) |
7 |
64 min |
|
1ibr |
Yes |
Yes(5) |
7 |
98 min |
|
1gcj |
no |
Yes(6) |
7 |
76 min |
|
1qbk |
yes |
Yes(4) |
6 |
114 min |
|
1b3u |
Yes(3) |
Yes (5) |
7 |
34 min |
Times are
probably biased, because I uploaded them all together (almost)
Dejavu
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
Yes |
Yes(9) |
no |
15 min |
|
1bk6 |
Yes |
Yes(10) |
no |
16 min |
|
1ial |
Yes |
Yes(9) |
no |
16 min |
|
1ibr |
Yes |
Yes(3) |
no |
16 min |
|
1gcj |
Yes |
Yes(6) |
no |
7 min |
|
1qbk |
Yes |
Yes(2) |
no |
122 min |
|
1b3u |
Yes |
Yes(7) |
no |
53 min |
SSM
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
Yes |
No |
No |
1 min |
|
1bk6 |
Yes |
Yes (9) |
No |
1 min |
|
1ial |
Yes |
Yes (2) |
No |
1 min |
|
1ibr |
Yes |
Yes(5) |
No |
Sec |
|
1gcj |
Yes |
Yes(2) |
No |
Sec |
|
1qbk |
Yes |
No |
No |
Sec |
|
1b3u |
Yes |
Yes(8) |
No |
Sec |
Pride
|
|
Found itself on first position |
Another true positive |
Position of first false positive |
Time |
|
2bct |
Yes |
Yes(2) |
2 |
Sec |
|
1bk6 |
Yes |
Yes(1) |
2 |
Sec |
|
1ial |
Yes |
Yes(1) |
3 |
Sec |
|
1ibr |
Yes |
Yes(1) |
3 |
Sec |
|
1gcj |
Yes |
Yes(1) |
2 |
Sec |
|
1qbk |
No |
No |
1 |
Sec |
|
1b3u |
Yes |
Yes(1) |
3 |
Sec |
|
Server |
Trivial solution found (itself) |
Non-trivial solutions found |
Rank of first false positive |
Time |
|
CE |
7 |
7 |
7-12 |
|
|
Dali |
7 |
7 |
7 |
5-20 |
|
Dejavu |
7 |
7 |
0 |
7-120 |
|
Lock |
0 |
0 |
1 |
20-45 |
|
Matras |
5 |
7 |
6-7 |
30-130 |
|
Pride |
5 |
6 |
1-3 |
<1 |
|
SSM |
7 |
5 |
0 |
<1 |
|
Top |
6 |
4 |
0 |
5-200 |
|
Tops |
0 |
2 |
0 or 2 |
<5 |
|
Topscan |
2 |
7 |
3 |
<1 |
|
Vast |
4 |
7 |
0 or 4 |
20-45 |
It is possible that structures 1ho8, 1hu3, and 1ib2 belong also to this family. Their SSAP score is
higher than 70, but we didnt cover them in the results,because they are not
classified in the CATH.
The same is true for 1QbkB, but the sequence similarity with the family is
so high that we can dare join it to the family.