An overview of the Trichoderma reesei Cellobiohydrolase II Y169F structure (PDB code 1CB2) showing the RUBIK sections which have been generated. Each section is marked by a purple ball which acts as a link in your VRML browser.
To select individual sections directly click on one of the links in the list below.
This structure is refined using 2-fold non-crystallographic symmetry to a resolution of 2.0 Å, with a final R-factor 0.210 (Rfree 0.232).
Reference: Koivula A, Reinikainen T, Ruohonen L, Valkeajarvi A, Claeyssens M, Teleman O, Kleywegt GJ, Szardenings M, Rouvinen J, Jones TA, Teeri TT. The active site of Trichoderma reesei cellobiohydrolase II: the role of tyrosine 169. Protein Eng 9 (8): 691-699 (Aug 1996).
Some interesting residues:
You may also want to look at the residue-by-residue critique of the final model generated by OOPS. This may help you decide whether outliers are errors or features !
THR "A 85" is in box 313 ALA "A 86" is in box 305 THR "A 87" is in box 256 TYR "A 88" is in box 257 SER "A 89" is in box 265 GLY "A 90" is in box 265 ASN "A 91" is in box 266 PRO "A 92" is in box 258 PHE "A 93" is in box 258 VAL "A 94" is in box 322 GLY "A 95" is in box 313 VAL "A 96" is in box 314 THR "A 97" is in box 314 PRO "A 98" is in box 306 TRP "A 99" is in box 298 ALA "A 100" is in box 307 ASN "A 101" is in box 299 ALA "A 102" is in box 299 TYR "A 103" is in box 291 TYR "A 104" is in box 300 ALA "A 105" is in box 300 SER "A 106" is in box 292 GLU "A 107" is in box 292 VAL "A 108" is in box 300 SER "A 109" is in box 348 SER "A 110" is in box 348 LEU "A 111" is in box 293 ALA "A 112" is in box 293 ILE "A 113" is in box 357 PRO "A 114" is in box 349 SER "A 115" is in box 350 LEU "A 116" is in box 358 THR "A 117" is in box 358 GLY "A 118" is in box 414 ALA "A 119" is in box 366 MET "A 120" is in box 366 ALA "A 121" is in box 357 THR "A 122" is in box 421 ALA "A 123" is in box 365 ALA "A 124" is in box 357 ALA "A 125" is in box 356 ALA "A 126" is in box 364 VAL "A 127" is in box 308 ALA "A 128" is in box 356 LYS "A 129" is in box 364 VAL "A 130" is in box 308 PRO "A 131" is in box 307 SER "A 132" is in box 251 PHE "A 133" is in box 251 MET "A 134" is in box 243 TRP "A 135" is in box 187 LEU "A 136" is in box 179 ASP "A 137" is in box 179 THR "A 138" is in box 179 LEU "A 139" is in box 170 ASP "A 140" is in box 171 LYS "A 141" is in box 235 THR "A 142" is in box 234 PRO "A 143" is in box 234 LEU "A 144" is in box 234 MET "A 145" is in box 234 GLU "A 146" is in box 233 GLN "A 147" is in box 290 THR "A 148" is in box 298 LEU "A 149" is in box 298 ALA "A 150" is in box 297 ASP "A 151" is in box 354 ILE "A 152" is in box 298 ARG "A 153" is in box 297 THR "A 154" is in box 353 ALA "A 155" is in box 354 ASN "A 156" is in box 361 LYS "A 157" is in box 353 ASN "A 158" is in box 409 GLY "A 159" is in box 361 GLY "A 160" is in box 361 ASN "A 161" is in box 369 TYR "A 162" is in box 362 ALA "A 163" is in box 306 GLY "A 164" is in box 250 GLN "A 165" is in box 251 PHE "A 166" is in box 242 VAL "A 167" is in box 187 VAL "A 168" is in box 186 PHE "A 169" is in box 187 ASP "A 170" is in box 123 LEU "A 171" is in box 131 PRO "A 172" is in box 67 ASP "A 173" is in box 67 ARG "A 174" is in box 123 ASP "A 175" is in box 132 CYS "A 176" is in box 76 ALA "A 177" is in box 76 ALA "A 178" is in box 76 LEU "A 179" is in box 69 ALA "A 180" is in box 125 SER "A 181" is in box 124 ASN "A 182" is in box 124 GLY "A 183" is in box 123 GLU "A 184" is in box 115 TYR "A 185" is in box 114 SER "A 186" is in box 59 ILE "A 187" is in box 66 ALA "A 188" is in box 3 ASP "A 189" is in box 58 GLY "A 190" is in box 58 GLY "A 191" is in box 66 VAL "A 192" is in box 66 ALA "A 193" is in box 65 LYS "A 194" is in box 114 TYR "A 195" is in box 122 LYS "A 196" is in box 121 ASN "A 197" is in box 121 TYR "A 198" is in box 178 ILE "A 199" is in box 121 ASP "A 200" is in box 177 THR "A 201" is in box 177 ILE "A 202" is in box 185 ARG "A 203" is in box 184 GLN "A 204" is in box 176 ILE "A 205" is in box 233 VAL "A 206" is in box 241 VAL "A 207" is in box 240 GLU "A 208" is in box 232 TYR "A 209" is in box 297 SER "A 210" is in box 240 ASP "A 211" is in box 305 ILE "A 212" is in box 305 ARG "A 213" is in box 249 THR "A 214" is in box 249 LEU "A 215" is in box 250 LEU "A 216" is in box 194 VAL "A 217" is in box 195 ILE "A 218" is in box 138 GLU "A 219" is in box 131 PRO "A 220" is in box 131 ASP "A 221" is in box 132 SER "A 222" is in box 75 LEU "A 223" is in box 83 ALA "A 224" is in box 83 ASN "A 225" is in box 84 LEU "A 226" is in box 83 VAL "A 227" is in box 27 THR "A 228" is in box 28 ASN "A 229" is in box 28 LEU "A 230" is in box 28 GLY "A 231" is in box 20 THR "A 232" is in box 20 PRO "A 233" is in box 20 LYS "A 234" is in box 12 CYS "A 235" is in box 19 ALA "A 236" is in box 19 ASN "A 237" is in box 11 ALA "A 238" is in box 19 GLN "A 239" is in box 19 SER "A 240" is in box 18 ALA "A 241" is in box 74 TYR "A 242" is in box 75 LEU "A 243" is in box 74 GLU "A 244" is in box 73 CYS "A 245" is in box 74 ILE "A 246" is in box 130 ASN "A 247" is in box 73 TYR "A 248" is in box 129 ALA "A 249" is in box 129 VAL "A 250" is in box 137 THR "A 251" is in box 137 GLN "A 252" is in box 129 LEU "A 253" is in box 185 ASN "A 254" is in box 193 LEU "A 255" is in box 192 PRO "A 256" is in box 248 ASN "A 257" is in box 249 VAL "A 258" is in box 193 ALA "A 259" is in box 194 MET "A 260" is in box 194 TYR "A 261" is in box 202 LEU "A 262" is in box 138 ASP "A 263" is in box 139 ALA "A 264" is in box 147 GLY "A 265" is in box 148 HIS "A 266" is in box 148 ALA "A 267" is in box 148 GLY "A 268" is in box 149 TRP "A 269" is in box 84 LEU "A 270" is in box 92 GLY "A 271" is in box 100 TRP "A 272" is in box 93 PRO "A 273" is in box 100 ALA "A 274" is in box 44 ASN "A 275" is in box 92 GLN "A 276" is in box 100 ASP "A 277" is in box 43 PRO "A 278" is in box 35 ALA "A 279" is in box 91 ALA "A 280" is in box 91 GLN "A 281" is in box 34 LEU "A 282" is in box 90 PHE "A 283" is in box 90 ALA "A 284" is in box 90 ASN "A 285" is in box 90 VAL "A 286" is in box 82 TYR "A 287" is in box 145 LYS "A 288" is in box 89 ASN "A 289" is in box 81 ALA "A 290" is in box 81 SER "A 291" is in box 88 SER "A 292" is in box 145 PRO "A 293" is in box 145 ARG "A 294" is in box 200 ALA "A 295" is in box 201 LEU "A 296" is in box 145 ARG "A 297" is in box 202 GLY "A 298" is in box 146 LEU "A 299" is in box 147 ALA "A 300" is in box 203 THR "A 301" is in box 203 ASN "A 302" is in box 204 VAL "A 303" is in box 196 ALA "A 304" is in box 196 ASN "A 305" is in box 196 TYR "A 306" is in box 197 ASN "A 307" is in box 205 GLY "A 308" is in box 205 TRP "A 309" is in box 212 ASN "A 310" is in box 213 ILE "A 311" is in box 213 THR "A 312" is in box 221 SER "A 313" is in box 214 PRO "A 314" is in box 158 PRO "A 315" is in box 158 SER "A 316" is in box 150 TYR "A 317" is in box 150 THR "A 318" is in box 158 GLN "A 319" is in box 102 GLY "A 320" is in box 101 ASN "A 321" is in box 101 ALA "A 322" is in box 101 VAL "A 323" is in box 156 TYR "A 324" is in box 157 ASN "A 325" is in box 213 GLU "A 326" is in box 204 LYS "A 327" is in box 212 LEU "A 328" is in box 156 TYR "A 329" is in box 156 ILE "A 330" is in box 155 HIS "A 331" is in box 163 ALA "A 332" is in box 155 ILE "A 333" is in box 155 GLY "A 334" is in box 155 PRO "A 335" is in box 107 LEU "A 336" is in box 99 LEU "A 337" is in box 98 ALA "A 338" is in box 98 ASN "A 339" is in box 98 HIS "A 340" is in box 98 GLY "A 341" is in box 97 TRP "A 342" is in box 146 SER "A 343" is in box 153 ASN "A 344" is in box 153 ALA "A 345" is in box 154 PHE "A 346" is in box 210 PHE "A 347" is in box 211 ILE "A 348" is in box 203 THR "A 349" is in box 204 ASP "A 350" is in box 196 GLN "A 351" is in box 260 GLY "A 352" is in box 252 ARG "A 353" is in box 253 SER "A 354" is in box 261 GLY "A 355" is in box 261 LYS "A 356" is in box 262 GLN "A 357" is in box 206 PRO "A 358" is in box 206 THR "A 359" is in box 206 GLY "A 360" is in box 198 GLN "A 361" is in box 142 GLN "A 362" is in box 143 GLN "A 363" is in box 142 TRP "A 364" is in box 149 GLY "A 365" is in box 141 ASP "A 366" is in box 142 TRP "A 367" is in box 133 CYS "A 368" is in box 189 ASN "A 369" is in box 189 VAL "A 370" is in box 198 ILE "A 371" is in box 198 GLY "A 372" is in box 254 THR "A 373" is in box 254 GLY "A 374" is in box 253 PHE "A 375" is in box 309 GLY "A 376" is in box 261 ILE "A 377" is in box 260 ARG "A 378" is in box 316 PRO "A 379" is in box 315 SER "A 380" is in box 315 ALA "A 381" is in box 267 ASN "A 382" is in box 323 THR "A 383" is in box 267 GLY "A 384" is in box 275 ASP "A 385" is in box 219 SER "A 386" is in box 219 LEU "A 387" is in box 211 LEU "A 388" is in box 211 ASP "A 389" is in box 266 SER "A 390" is in box 259 PHE "A 391" is in box 259 VAL "A 392" is in box 259 TRP "A 393" is in box 252 VAL "A 394" is in box 251 LYS "A 395" is in box 244 PRO "A 396" is in box 244 GLY "A 397" is in box 245 GLY "A 398" is in box 245 GLU "A 399" is in box 244 CYS "A 400" is in box 181 ASP "A 401" is in box 189 GLY "A 402" is in box 181 THR "A 403" is in box 181 SER "A 404" is in box 182 ASP "A 405" is in box 174 SER "A 406" is in box 118 SER "A 407" is in box 118 ALA "A 408" is in box 117 PRO "A 409" is in box 117 ARG "A 410" is in box 116 PHE "A 411" is in box 126 ASP "A 412" is in box 125 SER "A 413" is in box 126 HIS "A 414" is in box 133 CYS "A 415" is in box 134 ALA "A 416" is in box 134 LEU "A 417" is in box 134 PRO "A 418" is in box 135 ASP "A 419" is in box 198 ALA "A 420" is in box 190 LEU "A 421" is in box 190 GLN "A 422" is in box 182 PRO "A 423" is in box 238 ALA "A 424" is in box 182 PRO "A 425" is in box 181 GLN "A 426" is in box 181 ALA "A 427" is in box 180 GLY "A 428" is in box 236 ALA "A 429" is in box 237 TRP "A 430" is in box 293 PHE "A 431" is in box 245 GLN "A 432" is in box 302 ALA "A 433" is in box 246 TYR "A 434" is in box 245 PHE "A 435" is in box 301 VAL "A 436" is in box 302 GLN "A 437" is in box 254 LEU "A 438" is in box 253 LEU "A 439" is in box 309 THR "A 440" is in box 310 ASN "A 441" is in box 254 ALA "A 442" is in box 317 ASN "A 443" is in box 317 PRO "A 444" is in box 317 SER "A 445" is in box 317 PHE "A 446" is in box 365 LEU "A 447" is in box 374 NAG "B 501" is in box 81 NAG "B 502" is in box 276 MAN "B 503" is in box 256 MAN "B 504" is in box 370 MAN "B 505" is in box 292 MAN "B 506" is in box 356 MAN "B 507" is in box 348 MAN "B 508" is in box 294 MAN "B 509" is in box 421