USF

Uppsala Software Factory - Libraries

Some of the programs require a library file to run. On the ftp server, these are typically included in the XXXX_etc directory (where XXX is the name of the package, e.g. xutil).

Trouble ftp-ing through your browser ? Look here !

From this page you can ftp these files directly if you like:

Note: file sizes are approximate and are for the files as they are on the ftp server (i.e., if a file is X MB compressed, it may well be 2X or 4X MB uncompressed).


RAVE SuiteFileApproximate size
ESSENS essens_rna5bp.pdb 5 kB
ESSENS essens_alpha.pdb 2 kB
ESSENS essens_beta.pdb 2 kB
ESSENS essens_ala.pdb 1 kB
ESSENS essens_phe.pdb 1 kB
ESSENS essens_dipep.pdb 1 kB


X-UTIL SuiteFileApproximate size
HETZE hetze.lib 18 kB
MOLEMAN2 moleman2.lib 18 kB
SEAMAN seaman.lib 12 kB
SOD sod.lib 1 kB


VOIDOO SuiteFileApproximate size
VOIDOO cavity.lib 4 kB
VOIDOO ms_cavity.lib 3 kB
VOIDOO prove_cavity.lib 5 kB
MAPROP maprop.radii 2 kB
MAPROP maprop.charges 3 kB
MAPROP maprop.polar 2 kB
MAPROP maprop.atypes 1 kB


DEJAVU SuiteFileApproximate size
DEJAVU 25% Culled PDB - July 2008 (~5950 PDB entries) dejavu_25_jul08.lib.gz ~3 MB (~8 MB uncompressed)
DEJAVU 99% Culled PDB - July 2008 (~23800 PDB entries; recommended; ~500,000 secondary structure elements) dejavu_100_jul08.lib.gz ~12 MB (~34 MB uncompressed)
Older versions ftp directory Varies


SPASM SuiteFileApproximate size
SAVANT savant.lib 1 kB
SPASM 25% Culled PDB - July 2008 (5933 PDB entries) spasm_25_jul08.lib.gz ~23 MB (~60 MB uncompressed)
SPASM 99% Culled PDB - July 2008 (23746 PDB entries; recommended; ~5.8 million residues) spasm_100_jul08.lib.gz ~100 MB (~265 MB uncompressed)
RIGOR July 2008 (53032 motifs) rigor_jul08.lib.gz ~5 MB (~27 MB uncompressed)
Older versions ftp directory Varies


SBIN SuiteFileApproximate size
STRUPRO/MSEQPRO sbin_analhomo.lib 2 kB
STRUPRO/MSEQPRO sbin_analogues.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum100.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum30.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum35.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum40.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum45.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum50.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum55.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum60.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum62.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum65.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum70.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum75.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum80.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum85.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum90.lib 2 kB
STRUPRO/MSEQPRO sbin_blosum95.lib 2 kB
STRUPRO/MSEQPRO sbin_gonnet.lib 2 kB
STRUPRO/MSEQPRO sbin_identity.lib 2 kB
STRUPRO/MSEQPRO sbin_pam250new.lib 2 kB
STRUPRO/MSEQPRO sbin_pam500.lib 2 kB
STRUPRO/MSEQPRO sbin_remote.lib 2 kB
STRUPRO/MSEQPRO sbin_sdm.lib 2 kB
STRUPRO/MSEQPRO sbin_hdsm.lib 2 kB


USF Latest update on 7 July, 2008.