USF

Uppsala Software Factory - Citing programs

This document is intended to help you decide which paper(s) to quote when referring to a program. Also see the list of references. Note that all Gerard's programs print one or more references at start-up.

Some reprints (PDF files) are available here.

ItemPaper(s) to cite
COMA Kleywegt, G.J. and Jones, T.A. (1999). Software for handling macromolecular envelopes. Acta Cryst D55, 941-944.
DATAMAN Kleywegt, G.J. and Jones, T.A. (1996). xdlMAPMAN and xdlDATAMAN - programs for reformatting, analysis and manipulation of biomacromolecular electron-density maps and reflection data sets. Acta Cryst D52, 826-828.
DEJAVU Kleywegt, G.J. and Jones, T.A. (1997). Detecting folding motifs and similarities in protein structures. Meth Enzymol 277, 525-545.
DEJAVU Kleywegt, G.J. and Jones, T.A. (1994). Halloween ... masks and bones. In "From First Map to Final Model", edited by S. Bailey, R. Hubbard and D. Waller. SERC Daresbury Laboratory, Warrington, pp. 59-66.
ESSENS Kleywegt, G.J. and Jones, T.A. (1997). Template convolution to enhance or detect structural features in macromolecular electron-density maps. Acta Cryst D53, 179-185.
LSQMAN Kleywegt, G.J. (1996). Use of non-crystallographic symmetry in protein structure refinement. Acta Cryst D52, 842-857.
MAMA Kleywegt, G.J. and Jones, T.A. (1994). Halloween ... masks and bones. In "From First Map to Final Model", edited by S. Bailey, R. Hubbard and D. Waller. SERC Daresbury Laboratory, Warrington, pp. 59-66.
MAMA Kleywegt, G.J. and Jones, T.A. (1999). Software for handling macromolecular envelopes. Acta Cryst D55, 941-944.
MAPMAN Kleywegt, G.J. and Jones, T.A. (1996). xdlMAPMAN and xdlDATAMAN - programs for reformatting, analysis and manipulation of biomacromolecular electron-density maps and reflection data sets. Acta Cryst D52, 826-828.
MASKIT Kleywegt, G.J. and Jones, T.A. (1999). Software for handling macromolecular envelopes. Acta Cryst D55, 941-944.
MOLEMAN(2) Kleywegt, G.J. (1997). Validation of protein models from C[alpha] coordinates alone. J Mol Biol 273, 371-376.
O Jones, T.A., Zou, J.Y., Cowan, S.W. and Kjeldgaard, M. (1991). Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Cryst A47, 110-119.
OOPS/OOPS2 Kleywegt, G.J. and Jones, T.A. (1996). Efficient rebuilding of protein structures. Acta Cryst D52, 829-832.
QDB Kleywegt, G.J. (1996). Use of non-crystallographic symmetry in protein structure refinement. Acta Cryst D52, 842-857.
RAVE Jones, T.A. (1992). A, yaap, asap, @#*? A set of averaging programs. In "Molecular Replacement", edited by E.J. Dodson, S. Gover and W. Wolf. SERC Daresbury Laboratory, Warrington, pp. 91-105.
RAVE Kleywegt, G.J. and Jones, T.A. (1994). Halloween ... masks and bones. In "From First Map to Final Model", edited by S. Bailey, R. Hubbard and D. Waller. SERC Daresbury Laboratory, Warrington, pp. 59-66.
RIGOR Kleywegt, G.J. (1999). Recognition of spatial motifs in protein structures. J Mol Biol 285, 1887-1897.
SBIN Kleywegt, G.J. and Jones, T.A. (1998). Databases in protein crystallography. Acta Cryst D54, 1119-1131.
SPASM Kleywegt, G.J. (1999). Recognition of spatial motifs in protein structures. J Mol Biol 285, 1887-1897.
VOIDOO Kleywegt, G.J. and Jones, T.A. (1994). Detection, delineation, measurement and display of cavities in macromolecular structures. Acta Cryst D50, 178-185.
XPLO2D Kleywegt, G.J. and Jones, T.A. (1998). Databases in protein crystallography. Acta Cryst D54, 1119-1131.


USF Latest update at 7 September, 2001.