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Diagram from MSDchem

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Compound: AL
Formula: AL 3+
Name(s):
  • aluminum ion
Experimental: PDB entry 2d3i | Residue A687 | Resolution 2.15 Å | MSD | RCSB | EDS | PDBsum | PDBREPORT | OCA | JenaLib | MMDB
Also in: 3 other PDB entries, namely 1XLM | 1XLG | 1XLH |

Coordinates
PDB file (".pdb"; experimental coordinates for 1 atoms from PDB entry 2d3i)
PDB file (".txt"; experimental coordinates)
No ideal coordinates available for this compound (MSDchem file irrelevant for mono-atomic compound AL)
Clean PDB file (".pdb"; no REMARKs; ATOM records; experimental coordinates; used for generating all derived data and dictionaries)
Clean PDB file (".txt"; no REMARKs; ATOM records; experimental coordinates; used for generating all derived data and dictionaries)

Visualisation
Jmol page
ChemScape Chime page

Dictionaries
X-PLOR/CNS topology file
X-PLOR/CNS parameter file (0 warnings, 0 notes)
X-PLOR/CNS energy minimisation input file
O dictionary entry could not be generated
O RS_FIT datablock (not needed in O 9.0 or later)
O RSR datablock (not needed in O 9.0 or later)
O connectivity entry (not needed in O 9.0 or later)
O torsion entry could not be generated
TNT file could not be generated for this entity

Miscellaneous
Disclaimer
EDS statistics
HETZE log file not created for mono-atomic compounds
Connection table not generated for this entity

Off-site
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Hit the link or button to visit the site or server
Description of what the site or server does or contains
Name and location of the site or server (links can be found in the main HIC-Up menu)
Validation
Compare all instances of "_AL" in the PDB to the ideal structure ValLigURL (Uppsala University)
Go! View model and electron density for "_AL A687" in PDB entry 2d3i (opens Java viewer) EDS (Uppsala University)
Go! Main EDS page for parent PDB entry 2d3i EDS (Uppsala University)
Description
Go! Ligand chemistry for "AL" in MSDchem MSD (EBI)
Go! Ligand chemistry for "AL" from MSDchem in XML format MSD (EBI)
Go! Information about "AL" in ChEBI ChEBI (EBI)
Go! Ligand chemistry for _AL in MSDchem@RCSB MSDchem@RCSB (Rutgers)
Go! CIF dictionary for "AL" Ligand Depot (Rutgers)
PDB entries
Go! List of all PDB entries containing "AL" from MSDmotif MSD (EBI)
Go! List of unique PDB entries containing "AL" from MSDmotif MSD (EBI)
Go! Download all instances of "AL" in the PDB including their environment (tar-file) MSD (EBI)
Go! List of PDB entries containing "_AL" PDBsum (EBI)
Go! List of PDB entries containing "AL" RCSB
Go! List of PDB entries containing "AL" Ligand Depot (Rutgers)
Go! List of PDB entries containing "AL" DHC JenaLib (Fritz Lipmann Institute)
Go! List of PDB entries containing "AL" OCA (Weizmann Institute)
Structural biology
Go! List PDB entries for which "AL" is a cognate ligand PROCOGNATE (EBI)
Go! Statistics about protein residues that interact with "AL" from MSDmotif MSD (EBI)
Go! Statistics about nucleic acid residues that interact with "AL" from MSDmotif MSD (EBI)
Go! Statistics about other ligands that interact with "AL" from MSDmotif MSD (EBI)
Go! Statistics about PROSITE motifs that interact with "AL" from MSDmotif MSD (EBI)
Go! Statistics about small 3D motifs that interact with "AL" from MSDmotif MSD (EBI)
Go! Statistics about secondary structure elements that interact with "AL" from MSDmotif MSD (EBI)
Search for "AL" in ReliBase ReliBase (CCDC)
Go! List of PDB entries containing "AL" and interacting residues FireDB (Spain)
Go! Search for "AL" in the PDB-Ligand database PDB-Ligand (Korea)
Miscellaneous
Go! Search for "AL" in the PubChem compound database PubChem (NCBI)
Go! Search for "AL 3+" in the Chemistry Webbook Chemistry Webbook (NIST)
Search for "aluminum ion" in the ChemDB compound database ChemDB (UC Irvine)
Go! Search for "aluminum ion" in the KEGG-Ligand database KEGG-Ligand (Kyoto University)
Go! Search for "aluminum ion" with Google Google

2D structure diagram from MSDchem

2D structure diagram from MSDchem@RCSB

3D Image generated with LIGPLOT

RASMOL image provided by Barani


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This page was created on Wed Feb 27 21:56:52 2008.