! Filename = oct_O_refi_dict.txt ! Created by XPLO2D V. 050802/3.3.2 at Sun Mar 2 04:05:41 2008 for A. Nonymous ! Auto-generated by XPLO2D from file oct_msd.pdb ! !!!!! ADD THIS FILE TO YOUR .bonds_angles DATABLOCK !!!!! !!!!! THEN UPDATE THE .bonds_angles DATABLOCK HEADER !!!!! ! ! -------------------------------------------------------- ! residue OCT ! centre C1 ! atom C1 C2 C3 C4 C5 C6 C7 C8 ! fragment_all C1 C2 C3 C4 C5 C6 C7 C8 ! fragment_sc C1 C2 C3 C4 C5 C6 C7 C8 ! side-chain C1 C2 C3 C4 C5 C6 C7 C8 ! ! connectivity ! connect_all C1 C2 C3 C4 C5 C6 C7 C8 ! ! torsion-angle definitions ! note: only the first 12 torsions can be used in O ! ! ! bond lengths ! bond_distance C1 C2 1.529 0.020 bond_distance C2 C3 1.529 0.020 bond_distance C3 C4 1.530 0.020 bond_distance C4 C5 1.528 0.020 bond_distance C5 C6 1.530 0.020 bond_distance C6 C7 1.529 0.020 bond_distance C7 C8 1.529 0.020 ! ! bond angles ! bond_angle C1 C2 C3 109.50 2.00 bond_angle C2 C3 C4 109.52 2.00 bond_angle C3 C4 C5 109.53 2.00 bond_angle C4 C5 C6 109.53 2.00 bond_angle C5 C6 C7 109.52 2.00 bond_angle C6 C7 C8 109.50 2.00 ! ! dihedral angles (fixed and flexible) ! torsion_fixed C1 C2 C3 C4 180.00 2.00 ! TRANS torsion - Actual value : -180.00 torsion_fixed C2 C3 C4 C5 180.00 2.00 ! TRANS torsion - Actual value : -180.00 torsion_fixed C3 C4 C5 C6 180.00 2.00 ! TRANS torsion - Actual value : -180.00 torsion_fixed C4 C5 C6 C7 180.00 2.00 ! TRANS torsion - Actual value : -180.00 torsion_fixed C5 C6 C7 C8 180.00 2.00 ! TRANS torsion - Actual value : -180.00 !