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Compound: BEF
Formula: BE F3 1-
Name(s):
  • beryllium trifluoride ion
Experimental: PDB entry 2a9o | Residue A201 | Resolution 1.65 Å | MSD | RCSB | EDS | PDBsum | PDBREPORT | OCA | JenaLib | MMDB
Also in: 36 other PDB entries, including 2R25 | 1W9I | 2A9P | 1LVK | 1ZES | 2PL1 | 2FMK | 1MMD | 1W7J | 2FKA | 2FLW | 2J8E | 2FMH | 1W9K | 1L5Y | complete list

WARNING - HETZE log file could not be created for this entity! Perhaps there are no covalently bonded atoms in this compound ?

Coordinates
PDB file (".pdb"; experimental coordinates for 4 atoms from PDB entry 2a9o)
PDB file (".txt"; experimental coordinates)
No ideal coordinates available for this compound (MSDchem file with too many short distances for BEF)
Clean PDB file (".pdb"; no REMARKs; ATOM records; experimental coordinates; used for generating all derived data and dictionaries)
Clean PDB file (".txt"; no REMARKs; ATOM records; experimental coordinates; used for generating all derived data and dictionaries)

Visualisation
Jmol page
ChemScape Chime page
VRML file (gzip-ed)

Dictionaries
PDB dictionary file (CONECT records, etc.)
X-PLOR/CNS files could not be generated for this entity (XPLO2D log file)
O dictionary entry could not be generated
O RS_FIT datablock (not needed in O 9.0 or later)
O RSR datablock (not needed in O 9.0 or later)
O connectivity entry (not needed in O 9.0 or later)
O torsion entry could not be generated
TNT file could not be generated for this entity

Miscellaneous
Disclaimer
EDS statistics
HETZE log file could not be created
Connection table could not be generated for this entity

Off-site
Action!
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Where?
Hit the link or button to visit the site or server
Description of what the site or server does or contains
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Validation
Compare all instances of "BEF" in the PDB to the ideal structure ValLigURL (Uppsala University)
Go! View model and electron density for "BEF A201" in PDB entry 2a9o (opens Java viewer) EDS (Uppsala University)
Go! Main EDS page for parent PDB entry 2a9o EDS (Uppsala University)
Description
Generate hydrogens and dictionaries (MDL, GROMOS87, GROMACS, REFMAC5, SYBYL2, AUTODOCK, WHAT IF, HEX, CNS, O, and SHELX) for "BEF" using the clean PDB file as input PRODRG2 server (University of Dundee)
Go! Ligand chemistry for "BEF" in MSDchem MSD (EBI)
Go! Ligand chemistry for "BEF" from MSDchem in XML format MSD (EBI)
Go! Information about "BEF" in ChEBI ChEBI (EBI)
Run Babel to convert the clean PDB file of "BEF" to canonical SMILES and other formats ChemDB (UC Irvine)
Go! Ligand chemistry for BEF in MSDchem@RCSB MSDchem@RCSB (Rutgers)
Go! CIF dictionary for "BEF" Ligand Depot (Rutgers)
PDB entries
Go! List of all PDB entries containing "BEF" from MSDmotif MSD (EBI)
Go! List of unique PDB entries containing "BEF" from MSDmotif MSD (EBI)
Go! Download all instances of "BEF" in the PDB including their environment (tar-file) MSD (EBI)
Go! List of PDB entries containing "BEF" PDBsum (EBI)
Go! List of PDB entries containing "BEF" RCSB
Go! List of PDB entries containing "BEF" Ligand Depot (Rutgers)
Go! List of PDB entries containing "BEF" DHC JenaLib (Fritz Lipmann Institute)
Go! List of PDB entries containing "BEF" OCA (Weizmann Institute)
Structural biology
Go! List PDB entries for which "BEF" is a cognate ligand PROCOGNATE (EBI)
Go! Statistics about protein residues that interact with "BEF" from MSDmotif MSD (EBI)
Go! Statistics about nucleic acid residues that interact with "BEF" from MSDmotif MSD (EBI)
Go! Statistics about other ligands that interact with "BEF" from MSDmotif MSD (EBI)
Go! Statistics about PROSITE motifs that interact with "BEF" from MSDmotif MSD (EBI)
Go! Statistics about small 3D motifs that interact with "BEF" from MSDmotif MSD (EBI)
Go! Statistics about secondary structure elements that interact with "BEF" from MSDmotif MSD (EBI)
Search for "BEF" in ReliBase ReliBase (CCDC)
Go! List of PDB entries containing "BEF" and interacting residues FireDB (Spain)
Go! Search for "BEF" in the PDB-Ligand database PDB-Ligand (Korea)
Miscellaneous
Go! Search for "BEF" in the PubChem compound database PubChem (NCBI)
Go! Search for "BE F3 1-" in the Chemistry Webbook Chemistry Webbook (NIST)
Search for "beryllium trifluoride ion" in the ChemDB compound database ChemDB (UC Irvine)
Go! Search for "beryllium trifluoride ion" in the KEGG-Ligand database KEGG-Ligand (Kyoto University)
Go! Search for "beryllium trifluoride ion" with Google Google

2D structure diagram from MSDchem

2D structure diagram from MSDchem@RCSB

3D Image generated with LIGPLOT

RASMOL image provided by Barani


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This page was created on Thu Feb 28 23:16:58 2008.