! Filename = 977_O_refi_dict.txt ! Created by XPLO2D V. 050802/3.3.2 at Thu Feb 28 14:00:39 2008 for A. Nonymous ! Auto-generated by XPLO2D from file 977_msd.pdb ! !!!!! ADD THIS FILE TO YOUR .bonds_angles DATABLOCK !!!!! !!!!! THEN UPDATE THE .bonds_angles DATABLOCK HEADER !!!!! ! ! -------------------------------------------------------- ! residue 977 ! centre N1 ! atom N1 C2 N3 C4 C5 BR6 C7 O8 N9 C10 \ C11 C12 C13 C14 C15 ! fragment_all N1 C2 N3 C4 C5 BR6 C7 O8 N9 C10 \ C11 C12 C13 C14 C15 ! fragment_sc N1 C2 N3 C4 C5 BR6 C7 O8 N9 C10 \ C11 C12 C13 C14 C15 ! side-chain N1 C2 N3 C4 C5 BR6 C7 O8 N9 C10 \ C11 C12 C13 C14 C15 ! ! connectivity ! connect_all N1 C2 N3 C4 C5 BR6 connect_all C2 N9 C7 C5 connect_all C4 C10 C11 C12 C13 C14 C15 C10 connect_all C7 O8 ! ! torsion-angle definitions ! note: only the first 12 torsions can be used in O ! torsion tor1 N3 C4 C10 C11 C11 C12 C13 C14 C15 ! ! bond lengths ! bond_distance N1 C2 1.385 0.020 bond_distance C2 N3 1.323 0.020 bond_distance C2 N9 1.326 0.020 bond_distance N3 C4 1.332 0.020 bond_distance C4 C5 1.393 0.020 bond_distance C4 C10 1.483 0.020 bond_distance C5 BR6 1.890 0.020 bond_distance C5 C7 1.393 0.020 bond_distance C7 O8 1.355 0.020 bond_distance C7 N9 1.327 0.020 bond_distance C10 C11 1.393 0.020 bond_distance C10 C15 1.392 0.020 bond_distance C11 C12 1.380 0.020 bond_distance C12 C13 1.382 0.020 bond_distance C13 C14 1.383 0.020 bond_distance C14 C15 1.381 0.020 ! ! bond angles ! bond_angle N1 C2 N3 119.15 2.00 bond_angle N1 C2 N9 119.07 2.00 bond_angle N3 C2 N9 121.78 2.00 bond_angle C2 N3 C4 120.76 2.00 bond_angle N3 C4 C5 119.06 2.00 bond_angle N3 C4 C10 120.45 2.00 bond_angle C5 C4 C10 120.50 2.00 bond_angle C4 C5 BR6 120.82 2.00 bond_angle C4 C5 C7 118.38 2.00 bond_angle BR6 C5 C7 120.80 2.00 bond_angle C5 C7 O8 120.41 2.00 bond_angle C5 C7 N9 119.20 2.00 bond_angle O8 C7 N9 120.39 2.00 bond_angle C2 N9 C7 120.83 2.00 bond_angle C4 C10 C11 120.13 2.00 bond_angle C4 C10 C15 120.13 2.00 bond_angle C11 C10 C15 119.74 2.00 bond_angle C10 C11 C12 119.89 2.00 bond_angle C11 C12 C13 120.14 2.00 bond_angle C12 C13 C14 120.26 2.00 bond_angle C13 C14 C15 120.08 2.00 bond_angle C10 C15 C14 119.89 2.00 ! ! dihedral angles (fixed and flexible) ! torsion_fixed N1 C2 N3 C4 180.00 2.00 ! TRANS torsion - Actual value : 179.77 torsion_fixed N9 C2 N3 C4 0.00 2.00 ! CIS torsion - Actual value : -0.52 torsion_fixed N1 C2 N9 C7 180.00 2.00 ! TRANS torsion - Actual value : -180.00 torsion_fixed N3 C2 N9 C7 0.00 2.00 ! CIS torsion - Actual value : 0.30 torsion_fixed C2 N3 C4 C5 0.00 2.00 ! CIS torsion - Actual value : 0.44 torsion_fixed C2 N3 C4 C10 180.00 2.00 ! TRANS torsion - Actual value : -179.75 torsion_fixed N3 C4 C5 BR6 180.00 2.00 ! TRANS torsion - Actual value : 179.70 torsion_fixed N3 C4 C5 C7 0.00 2.00 ! CIS torsion - Actual value : -0.16 torsion_fixed C10 C4 C5 BR6 0.00 2.00 ! CIS torsion - Actual value : -0.11 torsion_fixed C10 C4 C5 C7 180.00 2.00 ! TRANS torsion - Actual value : -179.97 torsion_flexible N3 C4 C10 C11 140.00 20.00 ! Descriptive torsion - Actual value : 140.24 torsion_flexible N3 C4 C10 C15 -39.00 20.00 ! Descriptive torsion - Actual value : -39.44 torsion_flexible C5 C4 C10 C11 -40.00 20.00 ! Descriptive torsion - Actual value : -39.95 torsion_flexible C5 C4 C10 C15 140.00 20.00 ! Descriptive torsion - Actual value : 140.37 torsion_fixed C4 C5 C7 O8 180.00 2.00 ! TRANS torsion - Actual value : 179.94 torsion_fixed C4 C5 C7 N9 0.00 2.00 ! CIS torsion - Actual value : -0.05 torsion_fixed BR6 C5 C7 O8 0.00 2.00 ! CIS torsion - Actual value : 0.08 torsion_fixed BR6 C5 C7 N9 180.00 2.00 ! TRANS torsion - Actual value : -179.91 torsion_fixed C5 C7 N9 C2 0.00 2.00 ! CIS torsion - Actual value : -0.01 torsion_fixed O8 C7 N9 C2 180.00 2.00 ! TRANS torsion - Actual value : 180.00 torsion_fixed C4 C10 C11 C12 180.00 2.00 ! TRANS torsion - Actual value : 179.77 torsion_fixed C15 C10 C11 C12 0.00 2.00 ! CIS torsion - Actual value : -0.55 torsion_fixed C4 C10 C15 C14 180.00 2.00 ! TRANS torsion - Actual value : 179.98 torsion_fixed C11 C10 C15 C14 0.00 2.00 ! CIS torsion - Actual value : 0.30 torsion_fixed C10 C11 C12 C13 0.00 2.00 ! CIS torsion - Actual value : 0.50 torsion_fixed C11 C12 C13 C14 0.00 2.00 ! CIS torsion - Actual value : -0.19 torsion_fixed C12 C13 C14 C15 0.00 2.00 ! CIS torsion - Actual value : -0.06 torsion_fixed C13 C14 C15 C10 0.00 2.00 ! CIS torsion - Actual value : 0.00 ! ! improper torsion angles ! torsion_fixed C2 N1 N3 N9 0.00 2.00 ! Actual value : 0.16 torsion_fixed C4 N3 C5 C10 0.00 2.00 ! Actual value : -0.11 torsion_fixed C5 C4 BR6 C7 0.00 2.00 ! Actual value : 0.08 torsion_fixed C7 C5 O8 N9 0.00 2.00 ! Actual value : 0.00 torsion_fixed C10 C4 C11 C15 0.00 2.00 ! Actual value : 0.18 !