OOPS Critique of model MOD

ResidueRemarks
ASN A2 [Loop or turn ] Bad RS R-factor (all atoms) = 0.216
Too high temperature factor = 32.04
H/N/Q side chain flips : 1 ASN ( 2 ) A
 
PHE A3 [Loop or turn ] Bad RSC = 1.37
Bumps : 2 PHE ( 3 ) A N -- 44 GLN ( 45 ) A NE2 0.273 2.727
 
ALA A4 [Loop or turn ] Unusual backbone torsions : 3 ALA ( 4 ) A omega poor
Unusual backbone conformations : 3 ALA ( 4 ) A 0
Unsatisfied H-bond donors : 3 ALA ( 4 ) A N
 
GLY A5 [Loop or turn ] Bad pep-flip = 3.30
Bad RS R-factor (all atoms) = 0.190
Unusual bond angles : 4 GLY ( 5 ) A N CA C 127.444 5.2
Unusual backbone torsions : 4 GLY ( 5 ) A Poor phi/psi
Unusual peptide oxygens : 4 GLY ( 5 ) A 3.35 20
 
ALA A6 [Beta strand ] Bad Phi-Psi = 54.61 103.94
NOTE - non-Gly positive PHI = 54.61
Unusual backbone conformations : 5 ALA ( 6 ) A 0
 
TRP A7 [Beta strand ] Bad RS R-factor (all atoms) = 0.169
Bad RSC = 1.71
Unusual bond lengths : 6 TRP ( 7 ) A CB CG 1.303 -6.3
Bumps : 6 TRP ( 7 ) A CD1 -- 121 TYR ( 133 ) C CB 0.124 3.076
 
LYS A8 [Beta strand ] Bad RS R-factor (all atoms) = 0.162
 
GLU A13 [Beta strand ] Bad RS R-factor (all atoms) = 0.231
Bad RSC = 2.19
Bumps : 12 GLU ( 13 ) A CG -- 57 VAL ( 58 ) A O 0.279 2.521 SYMM
Bumps : 12 GLU ( 13 ) A CD -- 57 VAL ( 58 ) A O 0.122 2.678 SYMM
Bumps : 12 GLU ( 13 ) A OE1 -- 118 THR ( 130 ) C CG2 0.118 2.682
Bumps : 12 GLU ( 13 ) A CD -- 118 THR ( 130 ) C CG2 0.114 3.086
Unsatisfied H-bond acceptors : 12 GLU ( 13 ) A OE2
 
ASN A14 [Loop or turn ] Bad RSC = 1.50
NOTE - non-Gly positive PHI = 69.85
Unusual backbone torsions : 13 ASN ( 14 ) A Poor phi/psi
 
GLU A17 [Alpha helix ] Bad RS R-factor (all atoms) = 0.202
Bad RSC = 1.22
Too high temperature factor = 31.26
 
LEU A18 [Alpha helix ] Bad RSC = 2.15
 
LEU A19 [Alpha helix ] Bad RS R-factor (all atoms) = 0.209
Bad RSC = 2.41
Chirality deviation : 18 LEU ( 19 ) A CA -4.1 25.9 34.4
Unusual bond angles : 18 LEU ( 19 ) A C CA CB 118.362 4.3
Unusual bond angles : 18 LEU ( 19 ) A CA CB CG 130.765 4.1
Unusual torsion angles : 18 LEU ( 19 ) A -2.0529
 
LYS A20 [Alpha helix ] Bad RS R-factor (all atoms) = 0.182
Too high temperature factor = 33.32
 
LEU A22 [Alpha helix ] Bad RSC = 1.94
 
ASN A25 [Loop or turn ] Bad RS R-factor (all atoms) = 0.219
Too high temperature factor = 33.05
Bumps : 24 ASN ( 25 ) A O -- 25 ALA ( 26 ) A C 0.031 2.769
 
ALA A26 [Alpha helix ] Bumps : 24 ASN ( 25 ) A O -- 25 ALA ( 26 ) A C 0.031 2.769
 
MET A27 [Alpha helix ] Bad RS R-factor (all atoms) = 0.201
Bad RSC = 1.80
Too high temperature factor = 37.85
 
LEU A28 [Alpha helix ] Bad RSC = 1.66
 
ARG A29 [Alpha helix ] Bad RS R-factor (all atoms) = 0.161
Bad RSC = 1.13
 
LYS A30 [Alpha helix ] Bad RS R-factor (all atoms) = 0.251
Too high temperature factor = 30.80
 
LYS A38 [Loop or turn ] Bad RS R-factor (all atoms) = 0.244
Too high temperature factor = 33.06
 
PRO A39 [Beta strand ] NOTE - Pro PHI (not near -65.4 +/- 11.2) = -81.44
Unusual backbone torsions : 38 PRO ( 39 ) A Poor PRO-phi
 
GLU A42 [Beta strand ] Bad RS R-factor (all atoms) = 0.201
Bad RSC = 1.81
Too high temperature factor = 32.55
 
ILE A43 [Beta strand ] Unsatisfied H-bond donors : 42 ILE ( 43 ) A N
 
GLN A45 [Beta strand ] Bad RSC = 1.80
Bumps : 2 PHE ( 3 ) A N -- 44 GLN ( 45 ) A NE2 0.273 2.727
H/N/Q side chain flips : 44 GLN ( 45 ) A
 
ALA A46 [Beta strand ] Bumps : 45 ALA ( 46 ) A O -- 46 GLY ( 47 ) A C 0.099 2.701
 
GLY A47 [Loop or turn ] Bad RS R-factor (all atoms) = 0.209
Unusual torsion angles : 46 GLY ( 47 ) A -2.4154
Unusual backbone torsions : 46 GLY ( 47 ) A Poor phi/psi
Bumps : 45 ALA ( 46 ) A O -- 46 GLY ( 47 ) A C 0.099 2.701
Unusual peptide oxygens : 46 GLY ( 47 ) A 3.33 25
 
ASP A48 [Loop or turn ] Bad RS R-factor (all atoms) = 0.161
Bad Phi-Psi = 68.71 -20.47
NOTE - non-Gly positive PHI = 68.71
Unusual backbone torsions : 47 ASP ( 48 ) A Poor phi/psi
 
TYR A51 [Beta strand ] Bad RSC = 1.55
 
ILE A52 [Beta strand ] Unusual bond lengths : 51 ILE ( 52 ) A CG1 CD1 1.346 -4.3
 
THR A57 [Loop or turn ] Bad RS R-factor (all atoms) = 0.162
 
VAL A58 [Loop or turn ] Bumps : 12 GLU ( 13 ) A CG -- 57 VAL ( 58 ) A O 0.279 2.521 SYMM
Bumps : 12 GLU ( 13 ) A CD -- 57 VAL ( 58 ) A O 0.122 2.678 SYMM
Bumps : 57 VAL ( 58 ) A O -- 58 ARG ( 59 ) A CB 0.006 2.794
 
ARG A59 [Beta strand ] Bad RS R-factor (all atoms) = 0.223
Bad RSC = 1.33
Bad Phi-Psi = -172.92 137.36
Too high temperature factor = 36.10
Unusual torsion angles : 58 ARG ( 59 ) A -2.0380
Bumps : 57 VAL ( 58 ) A O -- 58 ARG ( 59 ) A CB 0.006 2.794
Abnormal packing environments : 58 ARG ( 59 ) A -5.06
 
THR A60 [Beta strand ] Unusual rotamers : 59 THR ( 60 ) A 0.39
 
GLU A62 [Beta strand ] Bad RS R-factor (all atoms) = 0.168
Bad RSC = 1.48
 
ASN A64 [Beta strand ] Bad RSC = 1.54
H/N/Q side chain flips : 63 ASN ( 64 ) A
 
LYS A66 [Loop or turn ] Bad RS R-factor (all atoms) = 0.241
 
GLU A72 [Beta strand ] Bad RS R-factor (all atoms) = 0.270
Bad RSC = 1.78
Too high temperature factor = 36.48
 
GLU A73 [Loop or turn ] Bad Phi-Psi = -142.45 -152.74
Unusual backbone torsions : 72 GLU ( 73 ) A Poor phi/psi
 
THR A75 [Loop or turn ] Bad pep-flip = 3.23
Bad RS R-factor (all atoms) = 0.195
Unusual bond angles : 74 THR ( 75 ) A N CA C 124.392 4.7
Unusual bond angles : 74 THR ( 75 ) A C CA CB 102.162 -4.2
Bumps : 74 THR ( 75 ) A O -- 75 VAL ( 76 ) A CB 0.175 2.625
 
VAL A76 [Loop or turn ] Bad RS R-factor (all atoms) = 0.177
Bad Phi-Psi = 91.02 -52.71
NOTE - non-Gly positive PHI = 91.02
Unusual bond angles : 75 VAL ( 76 ) A N CA CB 118.955 5.0
Unusual backbone torsions : 75 VAL ( 76 ) A Poor phi/psi
Bumps : 74 THR ( 75 ) A O -- 75 VAL ( 76 ) A CB 0.175 2.625
Unusual backbone conformations : 75 VAL ( 76 ) A 0
 
GLY A78 [Loop or turn ] Unsatisfied H-bond donors : 77 GLY ( 78 ) A N
 
ARG A79 [Loop or turn ] Too high temperature factor = 36.29
 
LEU A84 [Beta strand ] Bad RSC = 2.30
 
GLU A88 [Loop or turn ] Bad RSC = 1.30
 
ALA A89 [Loop or turn ] Bumps : 88 ALA ( 89 ) A O -- 89 GLU ( 90 ) A C 0.027 2.773
Unusual backbone conformations : 88 ALA ( 89 ) A 2
 
GLU A90 [Loop or turn ] Bumps : 88 ALA ( 89 ) A O -- 89 GLU ( 90 ) A C 0.027 2.773
 
ASN A91 [Loop or turn ] Bad RS R-factor (all atoms) = 0.200
Bad RSC = 1.56
Chirality deviation : 90 ASN ( 91 ) A CA -4.4 23.4 33.8
Unusual backbone conformations : 90 ASN ( 91 ) A 1
 
LYS A92 [Beta strand ] Unusual torsion angles : 91 LYS ( 92 ) A -2.1302
Bumps : 91 LYS ( 92 ) A CE -- 102 THR ( 110 ) B CG2 0.011 3.189
 
THR B110 [Beta strand ] Unusual bond lengths : 102 THR ( 110 ) B CB CG2 1.384 -4.1
Unusual bond angles : 102 THR ( 110 ) B N CA CB 101.069 -5.5
Bumps : 91 LYS ( 92 ) A CE -- 102 THR ( 110 ) B CG2 0.011 3.189
 
GLU B112 [Beta strand ] Bad RS R-factor (all atoms) = 0.200
Bad RSC = 2.01
Unsatisfied H-bond acceptors : 104 GLU ( 112 ) B OE1
 
LEU B113 [Loop or turn ] Bad pep-flip = 4.46
 
LEU C120 [Beta strand ] Bad RSC = 2.23
 
ALA C124 [Beta strand ] Bumps : 112 ALA ( 124 ) C O -- 113 ASP ( 125 ) C C 0.122 2.678
 
ASP C125 [Loop or turn ] Bad RS R-factor (all atoms) = 0.215
Bad RSC = 1.80
Bad Phi-Psi = 36.82 74.81
NOTE - non-Gly positive PHI = 36.82
Too high temperature factor = 32.04
Unusual torsion angles : 113 ASP ( 125 ) C -2.3772
Bumps : 112 ALA ( 124 ) C O -- 113 ASP ( 125 ) C C 0.122 2.678
Bumps : 113 ASP ( 125 ) C O -- 114 ASP ( 126 ) C CB 0.108 2.692
 
ASP C126 [Loop or turn ] Bad RS R-factor (all atoms) = 0.205
Bad RSC = 1.26
Bad Phi-Psi = 91.55 -46.75
NOTE - non-Gly positive PHI = 91.55
Too high temperature factor = 32.86
Unusual backbone torsions : 114 ASP ( 126 ) C Poor phi/psi
Bumps : 113 ASP ( 125 ) C O -- 114 ASP ( 126 ) C CB 0.108 2.692
Unusual backbone conformations : 114 ASP ( 126 ) C 0
 
THR C130 [Beta strand ] Bumps : 12 GLU ( 13 ) A OE1 -- 118 THR ( 130 ) C CG2 0.118 2.682
Bumps : 12 GLU ( 13 ) A CD -- 118 THR ( 130 ) C CG2 0.114 3.086
 
TYR C133 [Beta strand ] Bumps : 6 TRP ( 7 ) A CD1 -- 121 TYR ( 133 ) C CB 0.124 3.076
 

Generated at Tue Jul 1 23:41:14 2003 by OOPS2 version 021121/1.2.5