! Filename = eug_O_refi_dict.txt ! Created by XPLO2D V. 050802/3.3.2 at Fri Feb 29 19:52:34 2008 for A. Nonymous ! Auto-generated by XPLO2D from file eug_msd.pdb ! !!!!! ADD THIS FILE TO YOUR .bonds_angles DATABLOCK !!!!! !!!!! THEN UPDATE THE .bonds_angles DATABLOCK HEADER !!!!! ! ! -------------------------------------------------------- ! residue EUG ! centre C1 ! atom C1 C2 C3 C4 C5 C6 C7 C8 C9 O3 \ O4 ! fragment_all C1 C2 C3 C4 C5 C6 C7 C8 C9 O3 \ O4 ! fragment_sc C1 C2 C3 C4 C5 C6 C7 C8 C9 O3 \ O4 ! side-chain C1 C2 C3 C4 C5 C6 C7 C8 C9 O3 \ O4 ! ! connectivity ! connect_all C1 C2 C3 C4 C5 C6 C1 C7 C8 connect_all C3 O3 C9 connect_all C4 O4 ! ! torsion-angle definitions ! note: only the first 12 torsions can be used in O ! ! ! bond lengths ! bond_distance C1 C2 1.395 0.020 bond_distance C1 C6 1.395 0.020 bond_distance C1 C7 1.478 0.020 bond_distance C2 C3 1.382 0.020 bond_distance C3 C4 1.392 0.020 bond_distance C3 O3 1.361 0.020 bond_distance C4 C5 1.386 0.020 bond_distance C4 O4 1.360 0.020 bond_distance C5 C6 1.380 0.020 bond_distance C7 C8 1.326 0.020 bond_distance C9 O3 1.429 0.020 ! ! bond angles ! bond_angle C2 C1 C6 119.91 2.00 bond_angle C2 C1 C7 120.08 2.00 bond_angle C6 C1 C7 120.01 2.00 bond_angle C1 C2 C3 119.81 2.00 bond_angle C2 C3 C4 120.04 2.00 bond_angle C2 C3 O3 119.96 2.00 bond_angle C4 C3 O3 120.00 2.00 bond_angle C3 C4 C5 120.15 2.00 bond_angle C3 C4 O4 119.91 2.00 bond_angle C5 C4 O4 119.93 2.00 bond_angle C4 C5 C6 120.14 2.00 bond_angle C1 C6 C5 119.95 2.00 bond_angle C1 C7 C8 120.05 2.00 bond_angle C3 O3 C9 106.80 2.00 ! ! dihedral angles (fixed and flexible) ! torsion_fixed C6 C1 C2 C3 0.00 2.00 ! CIS torsion - Actual value : 0.04 torsion_fixed C7 C1 C2 C3 180.00 2.00 ! TRANS torsion - Actual value : -179.94 torsion_fixed C2 C1 C6 C5 0.00 2.00 ! CIS torsion - Actual value : 0.01 torsion_fixed C7 C1 C6 C5 180.00 2.00 ! TRANS torsion - Actual value : 179.99 torsion_fixed C2 C1 C7 C8 180.00 2.00 ! TRANS torsion - Actual value : 180.00 torsion_fixed C6 C1 C7 C8 0.00 2.00 ! CIS torsion - Actual value : 0.02 torsion_fixed C1 C2 C3 C4 0.00 2.00 ! CIS torsion - Actual value : 0.19 torsion_fixed C1 C2 C3 O3 180.00 2.00 ! TRANS torsion - Actual value : 180.00 torsion_fixed C2 C3 C4 C5 0.00 2.00 ! CIS torsion - Actual value : -0.48 torsion_fixed C2 C3 C4 O4 180.00 2.00 ! TRANS torsion - Actual value : -179.94 torsion_fixed O3 C3 C4 C5 180.00 2.00 ! TRANS torsion - Actual value : 179.71 torsion_fixed O3 C3 C4 O4 0.00 2.00 ! CIS torsion - Actual value : 0.25 torsion_fixed C2 C3 O3 C9 0.00 2.00 ! CIS torsion - Actual value : 0.01 torsion_fixed C4 C3 O3 C9 180.00 2.00 ! TRANS torsion - Actual value : 179.82 torsion_fixed C3 C4 C5 C6 0.00 2.00 ! CIS torsion - Actual value : 0.53 torsion_fixed O4 C4 C5 C6 180.00 2.00 ! TRANS torsion - Actual value : 180.00 torsion_fixed C4 C5 C6 C1 0.00 2.00 ! CIS torsion - Actual value : -0.29 ! ! improper torsion angles ! torsion_fixed C1 C2 C6 C7 0.00 2.00 ! Actual value : 0.01 torsion_fixed C3 C2 C4 O3 0.00 2.00 ! Actual value : -0.11 torsion_fixed C4 C3 C5 O4 0.00 2.00 ! Actual value : 0.31 !